Mathematics and Statistics

Mathematics and Statistics

Preprints


  1. "Coalescent experiments II: Markov bases of classical population genetic statistics", Raazesh Sainudiin, Kevin Thornton, James Booth, Michael Stillman and Ruriko Yoshida -- UCDMS Research Report 2009/8, May 19, 2009 (PDF 609KB)
  2. "Coalescent experiments I: Unlabeled n-coalescent and the site frequency spectrum", Raazesh Sainudiin, Kevin Thornton, Robert Griffiths, Gil McVean and Peter Donnelly -- UCDMS Research Report 2009/7, May 19, 2009 (PDF 498KB)
  3. "Extending Galton's Binomial Quincunx to the Trinomial Septcunx", Jennifer Harlow, Bry Ashman and Raazesh Sainudiin -- UCDMS Research Report 2009/6, May 4, 2009 (PDF 991KB). See preprint of Technology Innovations in Statistics Education: 3(2), 2009
  4. "Computational Statistical Experiments: STAT 218 - 08S2 (C) Student Projects Report" -- UCDMS Research Report 2009/5, May 4, 2009 (PDF 2.7MB)
  5. "A unified multi-resolution coalescent: Markov lumpings of the Kingman-Tajima n-coalescent", Raazesh Sainudiin and Tanja Stadler -- UCDMS Research Report 2009/4, April 5, 2009 (PDF 680KB); Version 2 revised on October 12, 2009 (PDF 692KB)
  6. "Auto-validating von Neumann Rejection Sampling from Small Phylogenetic Tree Spaces", Raazesh Sainudiin and Thomas York (PDF 1.1MB) [older version: December 2006, arXiv/math.ST/0612819 (arXiv link)] -- Algorithms for Molecular Biology 2009, 4:1 (Open Acess -- with sketchy latex support of the online versions as of April 25, 2009.)
  7. "Computational Statistical Experiments: STAT 218 - 07S2 (C) Student Projects Report" -- UCDMS Research Report 2008/5, 2008 (PDF 2.6MB)
  8. "Relative Contribution of Seed-transmitted Inoculum to Foliar Populations of Phaeosphaeria nodorum", Rebecca S. Bennett, Michael G. Milgroom, Raazesh Sainudiin, Barry M. Cunfer, and Gary C. Bergstrom -- Phytopathology 2007, 97(5):584-591 (PDF 141KB)
  9. "Identification of physicochemical selective pressure on protein encoding nucleotide sequences", Wendy S. W. Wong, Raazesh Sainudiin and Rasmus Nielsen -- BMC Bioinformatics 2006, 7:148 (Open Acess)
  10. "An Auto-validating Rejection Sampler", Raazesh Sainudiin and Thomas York -- BSCB Dept. Technical Report BU-1661-M, December 2005 (PDF 1.7MB) -- arXiv/math.ST/0611479 (arXiv link)
  11. "Machine Interval Experiments", Raazesh Sainudiin, Ph.D. dissertation in the field of Statistics, May 2005 (PDF 1.8MB)
  12. "Simple Models of Genomic Variation in Human SNP Density", Raazesh Sainudiin, Andrew Clark, and Rick Durrett -- BSCB Dept. Technical Report BU-1657-M, December 2004 (PDF 188KB). A revised form appeared in BMC Genomics 2007, 8:146 (Open Access)
  13. "Enclosing the Maximum Likelihood of the Simplest DNA Model Evolving on Fixed Topologies: Towards a Rigorous Framework for Phylogenetic Inference", Raazesh Sainudiin -- BSCB Dept. Technical Report BU-1653-M, February 2004 (revised December 2004) (PDF 1.7MB)
  14. "Detecting site-specific physicochemical selective pressures: applications to the class-I HLA of the human major histocompatibility complex and the SRK of the plant sporophytic self-incompatibility system," Raazesh Sainudiin, Wendy Shuk Wan Wong, Krithika Yogeeswaran, June Nasrallah, Ziheng Yang and Rasmus Nielsen -- BSCB Dept. Technical Report BU-1652-M (PDF 1.3MB), preprint of the manuscript in Journal of Molecular Evolution 2005 60: 315-326 (PDF 1.3MB)
  15. My M.S. thesis (PDF 584KB) in the field of Biometrics: "Statistical inference of microsatellite models: An application to humans and chimpanzees," Raazesh Sainudiin, Rasmus Nielsen (thesis advisor), Richard Durrett, and Charles Aquadro -- a manuscript form appeared in Genetics 2004 168: 383-395 (Open Access)
  16. "Models of Microsatellite Evolution," Calabrese, P. and Sainudiin, R., In R. Nielsen (Ed.), Statistical Methods in Molecular Evolution, Series: Statistics for Biology and Health, Springer, 2004 (PDF 208KB)