RAF-Analyser

Last updated 27 April 2018 - testing Catalyst Ensembles.

Note: This web application is undergoing constant development and updating. In particular, we fixed some bugs (2017-08-02 and 2017-08-11) that may have affected previous results.

Please enter some reactions and a food set, or modify the example data provided:

Testing:  

Instructions

A sample input dataset has been provided. The input format for Reactions is as follows:
        ReactionName (r1, r'1, r2, etc): Reactants [Catalysts] -> Products
 

The format for the Food set is as follows:
        F: a,b,c,etc

Each line of input is space separated. Extra spaces or characters will cause problems.
Reaction element labels can be alpha-numeric characters only, with the exception of a prime (single quote) character.
Multple Reactants and Products are separated by plus signs with no spaces.
Multiple Catalysts and the Food set elements are separated by commas with no spaces.
Catalyst Ensembles are denoted with an asterisk operator (see example 7).

Optionally, 2-way reactions can be denoted by <-> instead of a ->.
Reactions can be suppressed (i.e. commented out) with a % sign.

Click for a larger version
A figure of the example data set


Help

Please make sure your have Javascript enabled in your browser. Sometimes it may be necessary to clear your browser's cache to resolve issues with the RAF Analyser.

If you have any queries, or to report any bugs, please email Dietrich.


More example datasets

Example 1:


Example 2:


Example 3:


Example 4:


Example 5:


Example 6:


Example 7:



Read me first:
(click images to open)


Catalytic Reaction Systems
 


RAFs
 


CAFs and Pseudo RAFs
 


SubRAFs within the maxRAF
 

Hordijk, W. and Steel, M. (2017). Chasing the tail: The emergence of autocatalytic networks. Biosystems, 152: 1-10.
Java™ and GWT coding by Dietrich Radel.
Power Set algorithm from PrismoSkills used with permission.

  • Biomathematics Research Centre
    University of Canterbury
    Private Bag 4800, Christchurch
    New Zealand
  • Prof. Mike Steel
    Phone +64 3 364 2987 ext 7688
    Fax: +64 3 364 2587
    Mike.Steel@canterbury.ac.nz
  • Contacts Page
  • Follow us
    FacebookYoutubetwitterLinked In